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'nimble' models", "topics": [ "dNmixture", "dNmixture_BBNB_oneObs", "dNmixture_BBNB_s", "dNmixture_BBNB_v", "dNmixture_BBP_oneObs", "dNmixture_BBP_s", "dNmixture_BBP_v", "dNmixture_BNB_oneObs", "dNmixture_BNB_s", "dNmixture_BNB_v", "dNmixture_s", "dNmixture_v", "rNmixture_BBNB_oneObs", "rNmixture_BBNB_s", "rNmixture_BBNB_v", "rNmixture_BBP_oneObs", "rNmixture_BBP_s", "rNmixture_BBP_v", "rNmixture_BNB_oneObs", "rNmixture_BNB_s", "rNmixture_BNB_v", "rNmixture_s", "rNmixture_v" ] }, { "page": "dNmixture_steps", "title": "Internal helper nimbleFunctions for dNmixture distributions", "topics": [ "dNmixture_BBNB_steps", "dNmixture_BBP_steps", "dNmixture_BNB_steps", "dNmixture_steps", "nimNmixPois_logFac" ] }, { "page": "dNmixtureAD", "title": "N-mixture distributions with AD support for use in 'nimble' models", "topics": [ "dNmixtureAD", "dNmixtureAD_BBNB_oneObs", "dNmixtureAD_BBNB_s", "dNmixtureAD_BBNB_v", "dNmixtureAD_BBP_oneObs", "dNmixtureAD_BBP_s", "dNmixtureAD_BBP_v", 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"What is nimble?", "Getting help", "The concept of using new distributions for ecological model components.", "Illustration: A simple occupancy model", "MCMC with both versions of the example occupancy model.", "Build the model", "Simulate data", "Configure and build the MCMC", "Compile the model and MCMC", "Run the MCMC and extract the samples", "Do it all for the new version of the model", "Use the new version for something different: maximum likelihood or maximum a posteriori estimation.", "Support for automatic differentiation with nimbleEcology.", "Distributions provided in nimbleEcology", "A note on static typing", "Capture-recapture (dCJS)", "CJS distributions in nimbleEcology", "Hidden Markov models (HMMs) and Dynamic hidden Markov models (DHMMs)", "HMM and DHMM distributions in nimbleEcology", "Occupancy", "Occupancy models in nimbleEcology", "Dynamic occupancy", "Dynamic occupancy models in nimbleEcology", "N-mixture", "N-mixture models in nimbleEcology" ], "created": 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