Package: compareMCMCs 0.6.0

Perry de Valpine

compareMCMCs: Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines

Manages comparison of MCMC performance metrics from multiple MCMC algorithms. These may come from different MCMC configurations using the 'nimble' package or from other packages. Plug-ins for JAGS via 'rjags' and Stan via 'rstan' are provided. It is possible to write plug-ins for other packages. Performance metrics are held in an MCMCresult class along with samples and timing data. It is easy to apply new performance metrics. Reports are generated as html pages with figures comparing sets of runs. It is possible to configure the html pages, including providing new figure components.

Authors:Perry de Valpine [aut, cre], Sally Paganin [aut], Daniel Turek [aut], Christopher Paciorek [aut]

compareMCMCs_0.6.0.tar.gz
compareMCMCs_0.6.0.zip(r-4.5)compareMCMCs_0.6.0.zip(r-4.4)compareMCMCs_0.6.0.zip(r-4.3)
compareMCMCs_0.6.0.tgz(r-4.4-any)compareMCMCs_0.6.0.tgz(r-4.3-any)
compareMCMCs_0.6.0.tar.gz(r-4.5-noble)compareMCMCs_0.6.0.tar.gz(r-4.4-noble)
compareMCMCs_0.6.0.tgz(r-4.4-emscripten)compareMCMCs_0.6.0.tgz(r-4.3-emscripten)
compareMCMCs.pdf |compareMCMCs.html✨
compareMCMCs/json (API)

# Install 'compareMCMCs' in R:
install.packages('compareMCMCs', repos = c('https://nimble-dev.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/nimble-dev/comparemcmcs/issues

On CRAN:

4.71 score 1 stars 17 scripts 392 downloads 26 exports 43 dependencies

Last updated 2 months agofrom:47eef9c0c4. Checks:OK: 4 NOTE: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winOKNov 01 2024
R-4.5-linuxOKNov 01 2024
R-4.4-winNOTENov 01 2024
R-4.4-macNOTENov 01 2024
R-4.3-winOKNov 01 2024
R-4.3-macNOTENov 01 2024

Exports:addMetricsapplyConversionsclearMetricscombineMetricscompareMCMCsgetMetricsgetPageComponentsmake_MCMC_comparison_pagesMCMCdef_dummyMCMCdef_jagsMCMCdef_stanMCMCmetric_CI95MCMCmetric_CI95lowMCMCmetric_CI95uppMCMCmetric_efficiencyMCMCmetric_ESSMCMCmetric_meanMCMCmetric_medianMCMCmetric_sdMCMCresultregisterMCMCengineregisterMetricsregisterPageComponentsrenameMCMCunregisterMetricunregisterPageComponents

Dependencies:clicodacolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnimblenlmenumDerivpillarpkgconfigplyrpracmaR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbletidyselectutf8vctrsviridisLitewithrxtable

Overview of compareMCMCs

Rendered fromcompareMCMCs.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-10-02
Started: 2019-06-30